Precaution while using javascript in a page fragment or in ADF region

Don't include javascript in the page Fragment just after the jsp:root tag . It will cause undesired effects if this page is navigated from somewhere else.
This will be a wrong approach for a jsff page
<jsp:root xmlns:jsp="http://java.sun.com/JSP/Page" version="2.1"
          xmlns:af="http://xmlns.oracle.com/adf/faces/rich"
          xmlns:f="http://java.sun.com/jsf/core">
  <af:resource type="javascript" source="/js/custom.js"/>

The right approach is to include this resource component inside a  container component . Like this

<af:panelFormLayout>
  <af:resource type="javascript" source="/js/custom.js"/>
</af:panelFormLayout>